Applied Biosystems Announces Early-Access Program for Its Next-Generation Sequencing Platform



    Applied Biosystems (NYSE:ABI), an Applera Corporation business,
    has announced the launch of the early-access program for its
    next-generation DNA sequencing system. The company said that it has
    shipped initial units of its SOLiD(TM) System to leading research
    institutions that include Stanford University, and has begun accepting
    orders from other customers.

    The SOLiD platform, based on sequencing by oligonucleotide
    ligation and detection, is Applied Biosystems' next-generation system
    for ultra high throughput DNA analysis. Unlike polymerase sequencing
    approaches, the SOLiD System utilises a proprietary technology called
    stepwise ligation, which generates high quality data for applications
    such as whole genome sequencing, medical sequencing, genotyping, gene
    expression and small RNA discovery.

    The promise of next-generation sequencing technology is to broaden
    the applications of genomic information in medical research and health
    care, reduce the cost of DNA sequencing without sacrificing quality,
    and enable discoveries that may revolutionise the practice of
    medicine.

    Applied Biosystems acquired prototype technology for
    next-generation sequencing from Agencourt Personal Genomics in July
    2006 and has rapidly developed the SOLiD System. In less than a year,
    Applied Biosystems has increased sample throughput five-fold and base
    read length by 66 per cent, resulting in a system that is expected to
    accelerate advances in medical research, health care and other life
    science applications.

    Applied Biosystems is developing applications for the SOLiD System
    in collaboration with leading academic and research institutions that
    include Stanford, Broad Institute, Wellcome Trust Sanger Institute,
    Baylor College of Medicine, Joint Genome Institute, University of
    Queensland (Australia), and Washington University among others. This
    development process has resulted in one of the most advanced ultra
    high throughput next-generation sequencing platforms. The SOLiD System
    is distinguished by the following attributes:

    -- The SOLiD System features 2-base encoding, a proprietary
    mechanism that interrogates each base twice for errors during
    sequencing. The application of 2-base encoding rules during
    analysis removes measurement errors, resulting in high
    accuracy sequence data.

    -- The SOLiD System can generate more than one gigabase of
    useable data per run, which makes it one of the highest
    throughput next-generation sequencing systems. A gigabase is a
    measure that is the equivalent of one third of the human
    genome, which contains 3 billion bases of DNA.

    -- The SOLiD System's high accuracy, combined with mate-pair
    analysis, enables detection of sequence variation including,
    SNPs (single nucleotide polymorphisms), gene copy number
    variations, single base duplications, inversions, insertions
    and deletions. Mate-pair sample preparation is a method that
    enables highly accurate sequence assembly required for the
    analysis of complex genomes such as human, mouse and other
    model organisms. Combined with high accuracy, mate-pair
    analysis provides scientists with a flexible system that
    performs a variety of different applications, including gene
    expression studies for the detection of low-expressed genes,
    which are invisible on hybridisation arrays.

    -- The SOLiD System is designed to accommodate future sequencing
    applications. Adaptable to bead enrichment, the SOLiD platform
    can be scaled to support a higher density of sequence per
    slide. This provides the infrastructure for performing more
    complex genome studies as they are undertaken.

    "We have made rapid progress in developing the SOLiD System, which
    we believed had the best commercial viability among more than 40
    next-generation sequencing technologies we evaluated," said Mark P.
    Stevenson, president for Applied Biosystems' molecular and cell
    biology division. "We will continue to work with our customers and
    collaborators to further refine the system and develop the breadth of
    applications for what we believe will be the life science community's
    platform of choice for both current and future DNA analysis projects."

    Scientists at Stanford University have been using results
    generated on the SOLiD System to better understand complex biological
    processes. Dr Arend Sidow, PhD, an associate professor at Stanford
    School of Medicine, has analysed 282 megabases of aligned sequence
    data generated by the SOLiD System. Dr Sidow was able to create a high
    resolution map of nucleosome positioning in C. elegans (round worm), a
    model organism in the study of biological processes. The location of
    nucleosomes - tightly wound packing units of DNA - is thought to
    affect gene expression and provide insights into important regulatory
    mechanisms such as DNA transcription.

    "I believe the SOLiD System technology has the potential to
    deliver real breakthroughs in any application of sequencing aimed at
    understanding biological functions in complex genomes," said Dr Sidow.
    "After evaluating a number of potential technologies, we look forward
    to applying this ultra high throughput technology to projects such as
    targeted resequencing of cancer genes and other medically relevant
    research."

    In a microbial sequencing project, Dr George Weinstock, PhD,
    co-director at the Human Genome Sequencing Center at Baylor College of
    Medicine, first sequenced a strain of Escherichia coli using Sanger
    sequencing technologies. He then used the SOLiD System to resequence
    the genome for validation of the assembly. The SOLiD System read pair
    data identified a large duplication that had been missed in the
    assembly of the Sanger sequences.

    "The mate-pair technology in the SOLiD System will enable us to
    generate highly accurate sequence data for infectious disease
    pathogens and other microbes," said Dr Weinstock. "In our future
    efforts, we will continue to correlate phenotypes with genotypes of
    bacteria that have closely related genomes. For this research, we look
    forward to next-generation sequencing technologies capable of
    identifying all kinds of genetic variation that may occur between
    different species."

    Dr Elaine Mardis, PhD, director of technology development and
    co-director at the Genome Sequencing Center at Washington University
    School of Medicine, is an expert in the development of DNA sequencing
    technology. She is responsible for the many procedures and high
    throughput automated systems currently in use at the Genome Sequencing
    Center.

    "We are very enthusiastic about being an early access site for the
    Applied Biosystems SOLiD System," said Dr. Mardis. "Early access to
    the SOLiD System will enable us to evaluate this very important
    next-generation sequencing platform, and to develop key applications
    that capitalise on the strengths of this system. Early access to this
    system will perpetuate our long and productive relationship with
    Applied Biosystems."

    Applied Biosystems is a global leader in the development and
    commercialisation of instrument-based systems, consumables, software,
    and services for the life science market. The company commercialised
    the technology that helped scientists to sequence the human genome. By
    developing the SOLiD System, Applied Biosystems continues its
    leadership in DNA sequencing by commercialising technology that helps
    scientists to better understand and treat disease, based on genomic
    information. Further information about the SOLiD System is available
    at http://solid.appliedbiosystems.com.

    For more information, please contact:
    abdirect@eur.appliedbiosystems.com

    http://europe.appliedbiosystems.com

    (C) 2007 Applera Corporation and MDS Inc. All rights reserved.

    For research use only. Not for use in diagnostic procedures.

    Applera Corporation is committed to providing the world's leading
    technology and information for life scientists. Applera Corporation
    consists of the Applied Biosystems and Celera Genomics businesses.
    Applera Corporation undertakes no obligation to release publicly the
    results of any revisions to any forward-looking statement made or
    implied in this release, which may be made to reflect events or
    circumstances after the date hereof or to reflect the occurrence of
    unanticipated events. Statements in this release should be evaluated
    accordingly.

    AB (Design), ABI PRISM, Applied Biosystems, Applera and Celera are
    registered trademarks and SOLiD is a trademark of Applera Corporation
    or its subsidiaries in the U.S. and/or certain other countries.